The Ensembl project provides a comprehensive and integrated source of annotation of mainly vertebrate genome sequences. This workshop is aimed at researchers and developers interested in exploring Ensembl beyond the website. The workshop covers how to use the Ensembl REST APIs, including understanding the major endpoints and how to write Python scripts to call them.
Feedback from previous courses: "Wish I had taken the course long time ago. Didn't know before how good and powerful APIs are!" API workshop, EMBL-EBI, January 2016
"I really enjoyed the course, and the ENSEMBL API will become a very relevant part of my toolset." API workshop, Cambridge, December 2013
Bioinformaticians and wet-lab biologists who can program in Python.
After this course participants should be able to:
09:00-10:00 Overview of the Ensembl REST API
10:00-10:30 Accessing GET queries with the Ensembl REST API
10:30-11:00 Tea/Coffee Break
11:00-12:00 Decoding json with Python and chaining REST queries together
12:00-13:00 Accessing POST queries with the Ensembl REST API